PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ciclev10007899m
Common NameCICLE_v10007837mg
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family C2H2
Protein Properties Length: 557aa    MW: 60080.9 Da    PI: 9.0442
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ciclev10007899mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.90.0001685105323
                      ETTTTEEESSHHHHHHHHHHT CS
          zf-C2H2   3 CpdCgksFsrksnLkrHirtH 23 
                      C++C+k F r  nL+ H r H
  Ciclev10007899m  85 CEICNKGFQRDQNLQLHRRGH 105
                      *******************88 PP

2zf-C2H211.70.0008159181123
                      EEETTTTEEESSHHHHHHHHHHT CS
          zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                      +kC++C+k +  +s+ k H + +
  Ciclev10007899m 159 WKCEKCSKKYAVQSDWKAHSKIC 181
                      58*****************9876 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.602.6E-582105IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576674.8E-782105No hitNo description
PROSITE profilePS5015710.82483105IPR007087Zinc finger, C2H2
SMARTSM003550.1183105IPR015880Zinc finger, C2H2-like
PROSITE patternPS00028085105IPR007087Zinc finger, C2H2
SMARTSM0035582124154IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.601.9E-4147180IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576674.8E-7154179No hitNo description
SMARTSM00355140159179IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 557 aa     Download sequence    Send to blast
MKMMKGLLVE ENMSNLTSAS GEVIASSGSR VETGTNFYAQ HSFSSTNEAT PPSKKKRSLP  60
GNPDPDAEVI ALSPKSLMAT NRFLCEICNK GFQRDQNLQL HRRGHNLPWK LKQRTNKVER  120
KKVYVCPEPT CVHHDPSRAL GDLTGIKKHF SRKHGEKKWK CEKCSKKYAV QSDWKAHSKI  180
CGTREYKCDC GKLFSRRDSF ITHRAFCDVL AEESARTITV NPLFSPSQQQ PNSSATHMLN  240
FPSHHHHQLQ SQGLQALQLQ AVKIEDNNQQ HHIPPWLACP SSIDLSSQLF SGNIFSRSLL  300
HNENQSASPS PNPNSTSFAP FEPPGTTGSQ HTSATALLQK AAQMGATMST QPSALPAPVL  360
RVPVPHQTHH MPAGSASTAG AAGSSSGLGL SSREDLASGF VHNNLSSFGN KAAAAANPAY  420
MEQFAASTTT TTTGPGTAPS LLHDMMMSSF SCTNGFDGSS SSFDDALNGI LNPKGYGDFH  480
HAQLSRNNHE TRDNNGGGAG GSNAGGSDGL TRDFLGLKTF PHSHRDFVNI AGLDQINPSS  540
SSTFGPQNQN PRTWQG*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1109121KLKQRTNKVERKK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006450859.10.0hypothetical protein CICLE_v10007837mg
SwissprotQ8H1F51e-121IDD7_ARATH; Protein indeterminate-domain 7
TrEMBLV4WCD60.0V4WCD6_9R
STRINGVIT_04s0008g01160.t010.0(Vitis vinifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G55110.11e-105indeterminate(ID)-domain 7